STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3839Aldo/keto reductase family protein. (291 aa)    
Predicted Functional Partners:
ACH52_3836
Flavodoxin.
    0.980
ACH52_0098
Flavodoxin.
     0.932
ACH52_3838
Hypothetical protein.
      0.892
ACH52_3840
Hypothetical protein.
       0.785
ACH52_3837
NADPH-dependent FMN reductase.
  
    0.742
ACH52_2946
Methionine synthase MetH.
  
 0.693
ACH52_3841
NADPH-dependent FMN reductase.
  
    0.530
ACH52_2303
LacI family transcriptional regulator.
  
 
 
 0.447
ACH52_3842
Hypothetical protein.
       0.432
ACH52_0591
Hypothetical protein.
  
  
 0.426
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.