STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3883Phosphoglycerol transferase alkaline phosphatase superfamily. (647 aa)    
Predicted Functional Partners:
ACH52_3805
Hypothetical protein.
  
     0.565
ACH52_1022
Hypothetical protein.
  
     0.503
metG-2
methionyl-tRNA synthetase MetG; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.492
ACH52_1178
seryl-tRNA synthetase SerS.
 
     0.490
ACH52_2596
RelA/SpoT family protein.
      0.469
nadE
NAD synthetase NadE; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
    0.442
ACH52_1624
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
  
  
 0.433
ACH52_1443
Dinitrogenase iron-molybdenum cofactor biosynthesis protein.
  
     0.432
ACH52_0499
PAP2 family protein.
 
   
 0.423
ACH52_0857
Inosine-5'-monophosphate dehydrogenase GuaB.
       0.406
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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