STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQN34555.1Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
KQN34556.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.723
KQN34550.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.637
KQN34552.1
DNA metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.621
KQN34553.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.621
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.548
KQN34554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.547
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.505
KQN38637.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.419
Your Current Organism:
Pedobacter sp. Leaf41
NCBI taxonomy Id: 1736218
Other names: P. sp. Leaf41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.