STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQQ41180.11,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)    
Predicted Functional Partners:
KQQ40623.1
acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KQQ40679.1
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.773
KQQ25997.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.771
KQQ44516.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.765
KQQ42367.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.740
KQQ48075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.703
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
    
  0.548
KQQ40622.1
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
KQQ48342.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
KQQ40575.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.483
Your Current Organism:
Methylobacterium sp. Leaf125
NCBI taxonomy Id: 1736265
Other names: M. sp. Leaf125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.