STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQQ56107.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)    
Predicted Functional Partners:
KQQ54940.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
KQQ56108.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
KQQ53973.1
Poly(hydroxyalkanoate) granule-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
KQQ55563.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
KQQ53972.1
Poly(3-hydroxyalkanoate) granule-associated protein PhaI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
KQQ67766.1
H-NS histone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.425
KQQ55648.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
KQQ56179.1
ADP/ATP translocating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.413
KQQ68243.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Pseudomonas sp. Leaf127
NCBI taxonomy Id: 1736267
Other names: P. sp. Leaf127
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