KQP85093.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP85093.1

Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (819 aa)

Predicted Functional Partners:

KQP83449.1

0.991

KQP83500.1

0.989

cobH

0.987

KQP83443.1

0.978

KQP83454.1

0.977

KQP83441.1

0.972

KQP83451.1

0.972

KQP85096.1

0.968

KQP83452.1

0.958

cobN

0.957

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP83441.1	KQP83443.1	ASF35_00065	ASF35_00075	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KQP83441.1	KQP83449.1	ASF35_00065	ASF35_00110	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	cob(I)yrinic acid a,c-diamide adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
KQP83441.1	KQP83451.1	ASF35_00065	ASF35_00120	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KQP83441.1	KQP83452.1	ASF35_00065	ASF35_00125	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
KQP83441.1	KQP83454.1	ASF35_00065	ASF35_00140	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KQP83441.1	KQP83500.1	ASF35_00065	ASF35_00400	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KQP83441.1	KQP85093.1	ASF35_00065	ASF35_00105	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KQP83441.1	KQP85096.1	ASF35_00065	ASF35_00170	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
KQP83441.1	cobH	ASF35_00065	ASF35_00145	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KQP83441.1	cobN	ASF35_00065	ASF35_00190	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQP83443.1	KQP83441.1	ASF35_00075	ASF35_00065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KQP83443.1	KQP83449.1	ASF35_00075	ASF35_00110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	cob(I)yrinic acid a,c-diamide adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
KQP83443.1	KQP83451.1	ASF35_00075	ASF35_00120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KQP83443.1	KQP83452.1	ASF35_00075	ASF35_00125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
KQP83443.1	KQP83454.1	ASF35_00075	ASF35_00140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KQP83443.1	KQP83500.1	ASF35_00075	ASF35_00400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KQP83443.1	KQP85093.1	ASF35_00075	ASF35_00105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
KQP83443.1	KQP85096.1	ASF35_00075	ASF35_00170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
KQP83443.1	cobH	ASF35_00075	ASF35_00145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KQP83443.1	cobN	ASF35_00075	ASF35_00190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853