KQP84502.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP84502.1

Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)

Predicted Functional Partners:

KQP84500.1

0.963

KQP84501.1

0.948

KQP81812.1

0.943

KQP84475.1

0.910

KQP84809.1

0.907

KQP83693.1

0.896

KQP84312.1

0.896

KQP82083.1

0.841

KQP84986.1

0.809

KQP84881.1

0.780

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP81812.1	KQP84475.1	ASF35_09950	ASF35_06140	Molybdopterin biosynthesis-like protein MoeZ; The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; Derived by automated computational analysis using gene prediction method: Protein [...]	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KQP81812.1	KQP84501.1	ASF35_09950	ASF35_06295	Molybdopterin biosynthesis-like protein MoeZ; The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; Derived by automated computational analysis using gene prediction method: Protein [...]	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KQP81812.1	KQP84502.1	ASF35_09950	ASF35_06310	Molybdopterin biosynthesis-like protein MoeZ; The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; Derived by automated computational analysis using gene prediction method: Protein [...]	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
KQP81812.1	KQP84809.1	ASF35_09950	ASF35_08120	Molybdopterin biosynthesis-like protein MoeZ; The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; Derived by automated computational analysis using gene prediction method: Protein [...]	rRNA maturation RNase YbeY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
KQP81812.1	KQP84881.1	ASF35_09950	ASF35_08555	Molybdopterin biosynthesis-like protein MoeZ; The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; Derived by automated computational analysis using gene prediction method: Protein [...]	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
KQP81812.1	KQP84986.1	ASF35_09950	ASF35_09195	Molybdopterin biosynthesis-like protein MoeZ; The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; Derived by automated computational analysis using gene prediction method: Protein [...]	Ribosomal RNA small subunit methyltransferase H; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
KQP82083.1	KQP84475.1	ASF35_11570	ASF35_06140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
KQP82083.1	KQP84500.1	ASF35_11570	ASF35_06290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
KQP82083.1	KQP84501.1	ASF35_11570	ASF35_06295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KQP82083.1	KQP84502.1	ASF35_11570	ASF35_06310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KQP83693.1	KQP84475.1	ASF35_01550	ASF35_06140	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KQP83693.1	KQP84501.1	ASF35_01550	ASF35_06295	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
KQP83693.1	KQP84502.1	ASF35_01550	ASF35_06310	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
KQP83693.1	KQP84809.1	ASF35_01550	ASF35_08120	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA maturation RNase YbeY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
KQP83693.1	KQP84881.1	ASF35_01550	ASF35_08555	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
KQP83693.1	KQP84986.1	ASF35_01550	ASF35_09195	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal RNA small subunit methyltransferase H; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
KQP84312.1	KQP84475.1	ASF35_05165	ASF35_06140	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KQP84312.1	KQP84501.1	ASF35_05165	ASF35_06295	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
KQP84312.1	KQP84502.1	ASF35_05165	ASF35_06310	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
KQP84312.1	KQP84809.1	ASF35_05165	ASF35_08120	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA maturation RNase YbeY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936