KQP84625.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP84625.1

Exodeoxyribonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)

Predicted Functional Partners:

KQP84624.1

0.999

KQP85052.1

0.705

KQP82525.1

0.682

KQP82265.1

0.670

KQP84626.1

0.589

KQP82449.1

0.575

KQP81294.1

0.571

KQP81733.1

0.560

KQP84433.1

0.527

KQP85312.1

0.517

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP81294.1	KQP82265.1	ASF35_14615	ASF35_12610	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KQP81294.1	KQP82449.1	ASF35_14615	ASF35_13665	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
KQP81294.1	KQP82525.1	ASF35_14615	ASF35_12545	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Excinuclease ABC subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KQP81294.1	KQP84625.1	ASF35_14615	ASF35_07005	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
KQP81294.1	KQP85052.1	ASF35_14615	ASF35_09550	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
KQP81294.1	KQP85312.1	ASF35_14615	ASF35_09080	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KQP81733.1	KQP84625.1	ASF35_15365	ASF35_07005	Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
KQP81733.1	KQP85052.1	ASF35_15365	ASF35_09550	Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
KQP82265.1	KQP81294.1	ASF35_12610	ASF35_14615	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KQP82265.1	KQP82449.1	ASF35_12610	ASF35_13665	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KQP82265.1	KQP82525.1	ASF35_12610	ASF35_12545	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Excinuclease ABC subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82265.1	KQP84624.1	ASF35_12610	ASF35_07000	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease VII small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
KQP82265.1	KQP84625.1	ASF35_12610	ASF35_07005	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
KQP82265.1	KQP85052.1	ASF35_12610	ASF35_09550	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
KQP82265.1	KQP85312.1	ASF35_12610	ASF35_09080	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
KQP82449.1	KQP81294.1	ASF35_13665	ASF35_14615	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
KQP82449.1	KQP82265.1	ASF35_13665	ASF35_12610	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KQP82449.1	KQP82525.1	ASF35_13665	ASF35_12545	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Excinuclease ABC subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
KQP82449.1	KQP84625.1	ASF35_13665	ASF35_07005	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
KQP82449.1	KQP85052.1	ASF35_13665	ASF35_09550	DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589