KQP85321.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP85321.1

AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)

Predicted Functional Partners:

KQP84683.1

0.944

KQP84481.1

0.901

KQP84800.1

0.811

KQP85218.1

0.808

KQP84881.1

0.804

KQP82412.1

0.778

KQP84477.1

0.776

KQP84485.1

0.776

KQP84507.1

0.776

KQP84467.1

0.775

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP82412.1	KQP84467.1	ASF35_13450	ASF35_06095	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KQP82412.1	KQP84477.1	ASF35_13450	ASF35_06150	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
KQP82412.1	KQP84481.1	ASF35_13450	ASF35_06170	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
KQP82412.1	KQP84485.1	ASF35_13450	ASF35_06190	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KQP82412.1	KQP84507.1	ASF35_13450	ASF35_06335	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KQP82412.1	KQP84683.1	ASF35_13450	ASF35_07355	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KQP82412.1	KQP85218.1	ASF35_13450	ASF35_05495	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KQP82412.1	KQP85321.1	ASF35_13450	ASF35_09640	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KQP84467.1	KQP82412.1	ASF35_06095	ASF35_13450	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KQP84467.1	KQP84477.1	ASF35_06095	ASF35_06150	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP84467.1	KQP84481.1	ASF35_06095	ASF35_06170	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP84467.1	KQP84485.1	ASF35_06095	ASF35_06190	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP84467.1	KQP84507.1	ASF35_06095	ASF35_06335	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP84467.1	KQP84683.1	ASF35_06095	ASF35_07355	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
KQP84467.1	KQP84881.1	ASF35_06095	ASF35_08555	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
KQP84467.1	KQP85218.1	ASF35_06095	ASF35_05495	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
KQP84467.1	KQP85321.1	ASF35_06095	ASF35_09640	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
KQP84477.1	KQP82412.1	ASF35_06150	ASF35_13450	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
KQP84477.1	KQP84467.1	ASF35_06150	ASF35_06095	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP84477.1	KQP84481.1	ASF35_06150	ASF35_06170	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999