KQP82055.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

KQP82055.1

30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)

Predicted Functional Partners:

KQP83877.1

0.999

KQP84463.1

0.999

KQP84471.1

0.999

KQP84472.1

0.999

KQP84475.1

0.999

KQP84480.1

0.999

KQP84483.1

0.999

KQP84498.1

0.999

KQP84508.1

0.999

KQP82089.1

0.999

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP82055.1	KQP82089.1	ASF35_11405	ASF35_11610	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP83877.1	ASF35_11405	ASF35_02590	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84463.1	ASF35_11405	ASF35_06075	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84471.1	ASF35_11405	ASF35_06115	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84472.1	ASF35_11405	ASF35_06125	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84475.1	ASF35_11405	ASF35_06140	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84480.1	ASF35_11405	ASF35_06165	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84483.1	ASF35_11405	ASF35_06180	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84498.1	ASF35_11405	ASF35_06280	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82055.1	KQP84508.1	ASF35_11405	ASF35_06340	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP82055.1	ASF35_11610	ASF35_11405	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP83877.1	ASF35_11610	ASF35_02590	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84463.1	ASF35_11610	ASF35_06075	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84471.1	ASF35_11610	ASF35_06115	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84472.1	ASF35_11610	ASF35_06125	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84475.1	ASF35_11610	ASF35_06140	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84480.1	ASF35_11610	ASF35_06165	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84483.1	ASF35_11610	ASF35_06180	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQP82089.1	KQP84498.1	ASF35_11610	ASF35_06280	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP82089.1	KQP84508.1	ASF35_11610	ASF35_06340	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999