Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KQP82171.1Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
KQP82170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KQP82533.1
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.692
KQP84927.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.681
KQP84738.1
ATP-dependent Clp protease ATP-binding subunit ClpX; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.665
KQP82098.1
Thymidylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.625
KQP82169.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.564
KQP84930.1
Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.544
KQP85273.1
ATP-dependent Clp protease proteolytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.514
clpP
ATP-dependent Clp protease proteolytic subunit; Hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.514
KQP83554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
Your Current Organism:
Aeromicrobium sp. Leaf291
NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291
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