KQP82235.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP82235.1

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)

Predicted Functional Partners:

KQP83684.1

0.899

KQP85130.1

0.899

KQP84748.1

0.899

KQP81962.1

0.899

KQP82233.1

0.869

KQP82234.1

0.846

KQP82231.1

0.717

KQP82236.1

0.690

KQP84897.1

0.636

KQP84264.1

0.600

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP81962.1	KQP82235.1	ASF35_10880	ASF35_12430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KQP81962.1	KQP84748.1	ASF35_10880	ASF35_07760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
KQP81962.1	KQP85130.1	ASF35_10880	ASF35_01495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
KQP82231.1	KQP82233.1	ASF35_12410	ASF35_12420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
KQP82231.1	KQP82234.1	ASF35_12410	ASF35_12425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
KQP82231.1	KQP82235.1	ASF35_12410	ASF35_12430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
KQP82233.1	KQP82231.1	ASF35_12420	ASF35_12410	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
KQP82233.1	KQP82234.1	ASF35_12420	ASF35_12425	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
KQP82233.1	KQP82235.1	ASF35_12420	ASF35_12430	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KQP82233.1	KQP82236.1	ASF35_12420	ASF35_12435	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
KQP82233.1	KQP84897.1	ASF35_12420	ASF35_08660	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD+ synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQP82234.1	KQP82231.1	ASF35_12425	ASF35_12410	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
KQP82234.1	KQP82233.1	ASF35_12425	ASF35_12420	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
KQP82234.1	KQP82235.1	ASF35_12425	ASF35_12430	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KQP82234.1	KQP82236.1	ASF35_12425	ASF35_12435	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
KQP82234.1	KQP84897.1	ASF35_12425	ASF35_08660	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD+ synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQP82235.1	KQP81962.1	ASF35_12430	ASF35_10880	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KQP82235.1	KQP82231.1	ASF35_12430	ASF35_12410	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
KQP82235.1	KQP82233.1	ASF35_12430	ASF35_12420	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KQP82235.1	KQP82234.1	ASF35_12430	ASF35_12425	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846