KQP81150.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP81150.1

Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)

Predicted Functional Partners:

KQP81692.1

0.981

KQP81693.1

0.935

KQP81149.1

0.921

KQP85268.1

0.884

KQP82494.1

0.710

KQP81979.1

0.710

KQP82465.1

0.665

KQP81852.1

0.665

KQP81725.1

0.622

KQP82299.1

0.603

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP81149.1	KQP81150.1	ASF35_13745	ASF35_13755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KQP81149.1	KQP81692.1	ASF35_13745	ASF35_13740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KQP81149.1	KQP81693.1	ASF35_13745	ASF35_13750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KQP81149.1	KQP81725.1	ASF35_13745	ASF35_14875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin biosynthesis protein MoeA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KQP81149.1	KQP82299.1	ASF35_13745	ASF35_12800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic pyranopterin phosphate synthase MoaA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
KQP81150.1	KQP81149.1	ASF35_13755	ASF35_13745	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KQP81150.1	KQP81692.1	ASF35_13755	ASF35_13740	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KQP81150.1	KQP81693.1	ASF35_13755	ASF35_13750	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
KQP81150.1	KQP81725.1	ASF35_13755	ASF35_14875	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin biosynthesis protein MoeA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KQP81150.1	KQP81852.1	ASF35_13755	ASF35_10235	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KQP81150.1	KQP81979.1	ASF35_13755	ASF35_10985	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KQP81150.1	KQP82299.1	ASF35_13755	ASF35_12800	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic pyranopterin phosphate synthase MoaA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
KQP81150.1	KQP82465.1	ASF35_13755	ASF35_10060	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KQP81150.1	KQP82494.1	ASF35_13755	ASF35_10975	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KQP81150.1	KQP85268.1	ASF35_13755	ASF35_07460	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KQP81692.1	KQP81149.1	ASF35_13740	ASF35_13745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KQP81692.1	KQP81150.1	ASF35_13740	ASF35_13755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase family accessory protein FdhD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KQP81692.1	KQP81693.1	ASF35_13740	ASF35_13750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
KQP81692.1	KQP81725.1	ASF35_13740	ASF35_14875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin biosynthesis protein MoeA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
KQP81692.1	KQP81852.1	ASF35_13740	ASF35_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733