KQP81267.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP81267.1

Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)

Predicted Functional Partners:

KQP82533.1

0.979

KQP85076.1

0.957

KQP82495.1

0.914

KQP85289.1

0.905

KQP85075.1

0.905

KQP83938.1

0.887

KQP82142.1

0.866

KQP85253.1

0.861

KQP81908.1

0.861

KQP80771.1

0.840

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP80771.1	KQP81267.1	ASF35_17055	ASF35_14435	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
KQP80771.1	KQP82142.1	ASF35_17055	ASF35_11895	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
KQP80771.1	KQP82495.1	ASF35_17055	ASF35_10995	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
KQP80771.1	KQP82533.1	ASF35_17055	ASF35_13025	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KQP80771.1	KQP85075.1	ASF35_17055	ASF35_09695	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KQP80771.1	KQP85076.1	ASF35_17055	ASF35_09700	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KQP80771.1	KQP85289.1	ASF35_17055	ASF35_08365	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KQP81267.1	KQP80771.1	ASF35_14435	ASF35_17055	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
KQP81267.1	KQP81908.1	ASF35_14435	ASF35_10590	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
KQP81267.1	KQP82142.1	ASF35_14435	ASF35_11895	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
KQP81267.1	KQP82495.1	ASF35_14435	ASF35_10995	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KQP81267.1	KQP82533.1	ASF35_14435	ASF35_13025	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KQP81267.1	KQP83938.1	ASF35_14435	ASF35_02995	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetyl-L-homoserine sulfhydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
KQP81267.1	KQP85075.1	ASF35_14435	ASF35_09695	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
KQP81267.1	KQP85076.1	ASF35_14435	ASF35_09700	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
KQP81267.1	KQP85253.1	ASF35_14435	ASF35_06850	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
KQP81267.1	KQP85289.1	ASF35_14435	ASF35_08365	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
KQP81908.1	KQP81267.1	ASF35_10590	ASF35_14435	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
KQP81908.1	KQP82495.1	ASF35_10590	ASF35_10995	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
KQP81908.1	KQP82533.1	ASF35_10590	ASF35_13025	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972