KQP81396.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KQP81396.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)

Predicted Functional Partners:

KQP81395.1

0.995

KQP81393.1

0.990

KQP81394.1

0.988

KQP84176.1

0.768

KQP84183.1

0.746

KQP84870.1

0.745

KQP81224.1

0.679

KQP81397.1

0.562

KQP81392.1

0.561

KQP81730.1

0.551

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP81224.1	KQP81393.1	ASF35_14190	ASF35_15200	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KQP81224.1	KQP81394.1	ASF35_14190	ASF35_15205	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KQP81224.1	KQP81396.1	ASF35_14190	ASF35_15215	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
KQP81392.1	KQP81393.1	ASF35_15185	ASF35_15200	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
KQP81392.1	KQP81394.1	ASF35_15185	ASF35_15205	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
KQP81392.1	KQP81395.1	ASF35_15185	ASF35_15210	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
KQP81392.1	KQP81396.1	ASF35_15185	ASF35_15215	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
KQP81392.1	KQP81730.1	ASF35_15185	ASF35_15195	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KQP81393.1	KQP81224.1	ASF35_15200	ASF35_14190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KQP81393.1	KQP81392.1	ASF35_15200	ASF35_15185	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
KQP81393.1	KQP81394.1	ASF35_15200	ASF35_15205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KQP81393.1	KQP81395.1	ASF35_15200	ASF35_15210	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQP81393.1	KQP81396.1	ASF35_15200	ASF35_15215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KQP81393.1	KQP81397.1	ASF35_15200	ASF35_15220	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acyl-L-amino acid amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KQP81393.1	KQP81730.1	ASF35_15200	ASF35_15195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
KQP81393.1	KQP84176.1	ASF35_15200	ASF35_04370	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
KQP81393.1	KQP84183.1	ASF35_15200	ASF35_04415	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
KQP81393.1	KQP84870.1	ASF35_15200	ASF35_08495	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
KQP81394.1	KQP81224.1	ASF35_15205	ASF35_14190	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KQP81394.1	KQP81392.1	ASF35_15205	ASF35_15185	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638