KQP81503.1 protein (Aeromicrobium sp. Leaf291)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQP81503.1

Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)

Predicted Functional Partners:

KQP82098.1

0.954

KQP82219.1

0.952

KQP84749.1

0.947

KQP82229.1

0.916

KQP82141.1

0.914

KQP81502.1

0.859

KQP81934.1

0.849

KQP81929.1

0.848

KQP81935.1

0.847

KQP81501.1

0.799

Your Current Organism:

Aeromicrobium sp. Leaf291

NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQP81501.1	KQP81502.1	ASF35_15835	ASF35_15840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KQP81501.1	KQP81503.1	ASF35_15835	ASF35_15845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
KQP81502.1	KQP81501.1	ASF35_15840	ASF35_15835	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KQP81502.1	KQP81503.1	ASF35_15840	ASF35_15845	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
KQP81503.1	KQP81501.1	ASF35_15845	ASF35_15835	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
KQP81503.1	KQP81502.1	ASF35_15845	ASF35_15840	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
KQP81503.1	KQP81929.1	ASF35_15845	ASF35_10710	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KQP81503.1	KQP81934.1	ASF35_15845	ASF35_10735	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KQP81503.1	KQP81935.1	ASF35_15845	ASF35_10740	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KQP81503.1	KQP82098.1	ASF35_15845	ASF35_11655	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KQP81503.1	KQP82141.1	ASF35_15845	ASF35_11890	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides; the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KQP81503.1	KQP82219.1	ASF35_15845	ASF35_12345	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
KQP81503.1	KQP82229.1	ASF35_15845	ASF35_12400	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyuridine 5'-triphosphate nucleotidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KQP81503.1	KQP84749.1	ASF35_15845	ASF35_07765	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KQP81929.1	KQP81503.1	ASF35_10710	ASF35_15845	ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KQP81929.1	KQP81934.1	ASF35_10710	ASF35_10735	ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP81929.1	KQP81935.1	ASF35_10710	ASF35_10740	ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP81934.1	KQP81503.1	ASF35_10735	ASF35_15845	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KQP81934.1	KQP81929.1	ASF35_10735	ASF35_10710	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQP81934.1	KQP81935.1	ASF35_10735	ASF35_10740	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999