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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQP80769.1rRNA cytosine-C5-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)    
Predicted Functional Partners:
KQP80770.1
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
KQP84443.1
50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.991
KQP84466.1
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.990
KQP84469.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.988
KQP84484.1
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.988
KQP85234.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.976
KQP82461.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
KQP81749.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.972
KQP84477.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.962
KQP84455.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.959
Your Current Organism:
Aeromicrobium sp. Leaf291
NCBI taxonomy Id: 1736325
Other names: A. sp. Leaf291
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