KQQ25889.1 protein (Frondihabitans sp. Leaf304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQQ25889.1

Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)

Predicted Functional Partners:

KQQ25647.1

0.773

azoR

0.578

KQQ25648.1

0.477

KQQ25645.1

0.402

Your Current Organism:

Frondihabitans sp. Leaf304

NCBI taxonomy Id: 1736329
Other names: F. sp. Leaf304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQQ25645.1	KQQ25647.1	ASF54_14710	ASF54_14725	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KQQ25645.1	KQQ25889.1	ASF54_14710	ASF54_14720	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KQQ25645.1	azoR	ASF54_14710	ASF54_14715	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.	0.520
KQQ25647.1	KQQ25645.1	ASF54_14725	ASF54_14710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KQQ25647.1	KQQ25648.1	ASF54_14725	ASF54_14730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
KQQ25647.1	KQQ25889.1	ASF54_14725	ASF54_14720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQQ25647.1	azoR	ASF54_14725	ASF54_14715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.	0.578
KQQ25648.1	KQQ25647.1	ASF54_14730	ASF54_14725	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
KQQ25648.1	KQQ25889.1	ASF54_14730	ASF54_14720	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
KQQ25889.1	KQQ25645.1	ASF54_14720	ASF54_14710	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KQQ25889.1	KQQ25647.1	ASF54_14720	ASF54_14725	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQQ25889.1	KQQ25648.1	ASF54_14720	ASF54_14730	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
KQQ25889.1	azoR	ASF54_14720	ASF54_14715	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.	0.578
azoR	KQQ25645.1	ASF54_14715	ASF54_14710	Hypothetical protein; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
azoR	KQQ25647.1	ASF54_14715	ASF54_14725	Hypothetical protein; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
azoR	KQQ25889.1	ASF54_14715	ASF54_14720	Hypothetical protein; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578