KQS71853.1 protein (Modestobacter sp. Leaf380)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQS71853.1

Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)

Predicted Functional Partners:

ASG41_20065

0.996

KQS63659.1

0.933

KQS71306.1

0.929

KQS63654.1

0.905

KQS71307.1

0.874

KQS71852.1

0.768

KQS63653.1

0.693

KQS73677.1

0.673

KQS66445.1

0.670

KQS66719.1

0.662

Your Current Organism:

Modestobacter sp. Leaf380

NCBI taxonomy Id: 1736356
Other names: M. sp. Leaf380

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASG41_20065	KQS63653.1	ASG41_20065	ASG41_18625	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASG41_20065	KQS63654.1	ASG41_20065	ASG41_18630	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASG41_20065	KQS63659.1	ASG41_20065	ASG41_18655	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASG41_20065	KQS66445.1	ASG41_20065	ASG41_13155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASG41_20065	KQS66719.1	ASG41_20065	ASG41_09760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
ASG41_20065	KQS71306.1	ASG41_20065	ASG41_20070	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASG41_20065	KQS71307.1	ASG41_20065	ASG41_20075	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASG41_20065	KQS71852.1	ASG41_20065	ASG41_19230	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.999
ASG41_20065	KQS71853.1	ASG41_20065	ASG41_19235	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ASG41_20065	KQS73677.1	ASG41_20065	ASG41_03470	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KQS63653.1	ASG41_20065	ASG41_18625	ASG41_20065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQS63653.1	KQS63654.1	ASG41_18625	ASG41_18630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQS63653.1	KQS63659.1	ASG41_18625	ASG41_18655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
KQS63653.1	KQS66445.1	ASG41_18625	ASG41_13155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KQS63653.1	KQS71306.1	ASG41_18625	ASG41_20070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQS63653.1	KQS71307.1	ASG41_18625	ASG41_20075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQS63653.1	KQS71852.1	ASG41_18625	ASG41_19230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.713
KQS63653.1	KQS71853.1	ASG41_18625	ASG41_19235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KQS63654.1	ASG41_20065	ASG41_18630	ASG41_20065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQS63654.1	KQS63653.1	ASG41_18630	ASG41_18625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999