KQX58865.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX58865.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)

Predicted Functional Partners:

KQX47672.1

0.776

KQX48108.1

0.740

KQX47673.1

0.735

KQX47666.1

0.720

KQX59538.1

0.677

KQX49937.1

0.625

KQX50675.1

0.619

KQX53501.1

0.590

aspA

0.581

KQX50895.1

0.557

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX47666.1	KQX47672.1	ASD33_18105	ASD33_18135	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
KQX47666.1	KQX47673.1	ASD33_18105	ASD33_18140	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
KQX47666.1	KQX48108.1	ASD33_18105	ASD33_18145	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KQX47666.1	KQX58865.1	ASD33_18105	ASD33_00705	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
KQX47672.1	KQX47666.1	ASD33_18135	ASD33_18105	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
KQX47672.1	KQX47673.1	ASD33_18135	ASD33_18140	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
KQX47672.1	KQX48108.1	ASD33_18135	ASD33_18145	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KQX47672.1	KQX49937.1	ASD33_18135	ASD33_14945	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX47672.1	KQX50675.1	ASD33_18135	ASD33_11455	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
KQX47672.1	KQX58865.1	ASD33_18135	ASD33_00705	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
KQX47672.1	KQX59538.1	ASD33_18135	ASD33_04530	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KQX47673.1	KQX47666.1	ASD33_18140	ASD33_18105	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
KQX47673.1	KQX47672.1	ASD33_18140	ASD33_18135	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
KQX47673.1	KQX48108.1	ASD33_18140	ASD33_18145	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KQX47673.1	KQX58865.1	ASD33_18140	ASD33_00705	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
KQX48108.1	KQX47666.1	ASD33_18145	ASD33_18105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KQX48108.1	KQX47672.1	ASD33_18145	ASD33_18135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KQX48108.1	KQX47673.1	ASD33_18145	ASD33_18140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KQX48108.1	KQX58865.1	ASD33_18145	ASD33_00705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
KQX49937.1	KQX47672.1	ASD33_14945	ASD33_18135	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636