KQX58923.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX58923.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)

Predicted Functional Partners:

KQX58921.1

0.703

KQX58917.1

0.592

KQX58918.1

0.592

KQX58919.1

0.592

KQX58922.1

0.429

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX58917.1	KQX58918.1	ASD33_00990	ASD33_00995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQX58917.1	KQX58919.1	ASD33_00990	ASD33_01000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQX58917.1	KQX58923.1	ASD33_00990	ASD33_01020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58918.1	KQX58917.1	ASD33_00995	ASD33_00990	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQX58918.1	KQX58919.1	ASD33_00995	ASD33_01000	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQX58918.1	KQX58921.1	ASD33_00995	ASD33_01010	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58918.1	KQX58923.1	ASD33_00995	ASD33_01020	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58919.1	KQX58917.1	ASD33_01000	ASD33_00990	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQX58919.1	KQX58918.1	ASD33_01000	ASD33_00995	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQX58919.1	KQX58921.1	ASD33_01000	ASD33_01010	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58919.1	KQX58923.1	ASD33_01000	ASD33_01020	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58921.1	KQX58918.1	ASD33_01010	ASD33_00995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58921.1	KQX58919.1	ASD33_01010	ASD33_01000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58921.1	KQX58922.1	ASD33_01010	ASD33_01015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KQX58921.1	KQX58923.1	ASD33_01010	ASD33_01020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
KQX58922.1	KQX58921.1	ASD33_01015	ASD33_01010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KQX58922.1	KQX58923.1	ASD33_01015	ASD33_01020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KQX58923.1	KQX58917.1	ASD33_01020	ASD33_00990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58923.1	KQX58918.1	ASD33_01020	ASD33_00995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase co-factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
KQX58923.1	KQX58919.1	ASD33_01020	ASD33_01000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592