ASD33_02935 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASD33_02935

Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)

Predicted Functional Partners:

KQX57960.1

0.931

menG

0.854

KQX49750.1

0.793

KQX55707.1

0.793

KQX54473.1

0.734

KQX58858.1

0.727

KQX49751.1

0.673

KQX55708.1

0.673

ASD33_32475

0.672

KQX54511.1

0.660

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD33_02935	ASD33_32475	ASD33_02935	ASD33_32475	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
ASD33_02935	KQX49750.1	ASD33_02935	ASD33_13840	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ASD33_02935	KQX49751.1	ASD33_02935	ASD33_13845	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ASD33_02935	KQX54473.1	ASD33_02935	ASD33_32515	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
ASD33_02935	KQX54511.1	ASD33_02935	ASD33_32505	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
ASD33_02935	KQX55707.1	ASD33_02935	ASD33_30450	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ASD33_02935	KQX55708.1	ASD33_02935	ASD33_30455	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ASD33_02935	KQX57960.1	ASD33_02935	ASD33_26090	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ASD33_02935	KQX58858.1	ASD33_02935	ASD33_00665	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.727
ASD33_02935	menG	ASD33_02935	ASD33_02940	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).	0.854
ASD33_32475	ASD33_02935	ASD33_32475	ASD33_02935	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
ASD33_32475	KQX49751.1	ASD33_32475	ASD33_13845	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
ASD33_32475	KQX54473.1	ASD33_32475	ASD33_32515	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX54511.1	ASD33_32475	ASD33_32505	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX55708.1	ASD33_32475	ASD33_30455	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
ASD33_32475	KQX57960.1	ASD33_32475	ASD33_26090	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	menG	ASD33_32475	ASD33_02940	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).	0.678
KQX49750.1	ASD33_02935	ASD33_13840	ASD33_02935	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
KQX49750.1	KQX49751.1	ASD33_13840	ASD33_13845	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX49750.1	KQX55708.1	ASD33_13840	ASD33_30455	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999