KQX59403.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX59403.1

Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)

Predicted Functional Partners:

KQX57960.1

0.975

KQX53420.1

0.798

ASD33_03750

0.793

KQX54473.1

0.729

KQX50767.1

0.725

KQX59404.1

0.717

ASD33_32475

0.712

KQX54511.1

0.703

KQX57474.1

0.538

fabG

0.504

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD33_03750	KQX54473.1	ASD33_03750	ASD33_32515	Methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
ASD33_03750	KQX54511.1	ASD33_03750	ASD33_32505	Methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
ASD33_03750	KQX57960.1	ASD33_03750	ASD33_26090	Methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
ASD33_03750	KQX59403.1	ASD33_03750	ASD33_03755	Methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ASD33_03750	KQX59404.1	ASD33_03750	ASD33_03760	Methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
ASD33_32475	KQX50767.1	ASD33_32475	ASD33_11995	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX53420.1	ASD33_32475	ASD33_09615	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
ASD33_32475	KQX54473.1	ASD33_32475	ASD33_32515	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX54511.1	ASD33_32475	ASD33_32505	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX57474.1	ASD33_32475	ASD33_27685	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.800
ASD33_32475	KQX57960.1	ASD33_32475	ASD33_26090	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX59403.1	ASD33_32475	ASD33_03755	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
ASD33_32475	fabG	ASD33_32475	ASD33_08240	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-ACP reductase; Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.800
KQX50767.1	ASD33_32475	ASD33_11995	ASD33_32475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50767.1	KQX53420.1	ASD33_11995	ASD33_09615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
KQX50767.1	KQX54473.1	ASD33_11995	ASD33_32515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50767.1	KQX54511.1	ASD33_11995	ASD33_32505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50767.1	KQX57474.1	ASD33_11995	ASD33_27685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.783
KQX50767.1	KQX57960.1	ASD33_11995	ASD33_26090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50767.1	KQX59403.1	ASD33_11995	ASD33_03755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725