KQX52642.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX52642.1

Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)

Predicted Functional Partners:

KQX46146.1

0.965

KQX55378.1

0.965

dnaK

0.960

KQX57960.1

0.959

rplQ

0.899

rplO

0.890

rplM

0.889

rplC

0.889

rplK

0.886

rplN

0.884

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX46146.1	KQX52642.1	ASD33_22650	ASD33_05005	Heat-shock protein Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KQX46146.1	KQX55378.1	ASD33_22650	ASD33_31625	Heat-shock protein Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	0.999
KQX46146.1	KQX57960.1	ASD33_22650	ASD33_26090	Heat-shock protein Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
KQX46146.1	dnaK	ASD33_22650	ASD33_23840	Heat-shock protein Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe-S protein assembly chaperone HscA; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.999
KQX52642.1	KQX46146.1	ASD33_05005	ASD33_22650	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heat-shock protein Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KQX52642.1	KQX55378.1	ASD33_05005	ASD33_31625	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	0.965
KQX52642.1	KQX57960.1	ASD33_05005	ASD33_26090	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KQX52642.1	dnaK	ASD33_05005	ASD33_23840	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe-S protein assembly chaperone HscA; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.960
KQX52642.1	rplC	ASD33_05005	ASD33_02450	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.889
KQX52642.1	rplK	ASD33_05005	ASD33_02530	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.886
KQX52642.1	rplM	ASD33_05005	ASD33_02295	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.889
KQX52642.1	rplN	ASD33_05005	ASD33_02400	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.884
KQX52642.1	rplO	ASD33_05005	ASD33_02360	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.890
KQX52642.1	rplQ	ASD33_05005	ASD33_02315	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KQX55378.1	KQX46146.1	ASD33_31625	ASD33_22650	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	Heat-shock protein Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX55378.1	KQX52642.1	ASD33_31625	ASD33_05005	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KQX55378.1	KQX57960.1	ASD33_31625	ASD33_26090	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
KQX55378.1	rplC	ASD33_31625	ASD33_02450	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.860
KQX55378.1	rplK	ASD33_31625	ASD33_02530	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.827
KQX55378.1	rplM	ASD33_31625	ASD33_02295	Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.876