KQX52719.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX52719.1

Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)

Predicted Functional Partners:

KQX58775.1

0.757

KQX53320.1

0.705

KQX47239.1

0.700

KQX49360.1

0.682

KQX57991.1

0.668

KQX53583.1

0.660

KQX50904.1

0.654

KQX45528.1

0.640

KQX53686.1

0.615

KQX50924.1

0.614

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX45528.1	KQX47239.1	ASD33_24080	ASD33_20665	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
KQX45528.1	KQX52719.1	ASD33_24080	ASD33_05440	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KQX45528.1	KQX53320.1	ASD33_24080	ASD33_09030	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KQX45528.1	KQX53583.1	ASD33_24080	ASD33_10550	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
KQX47239.1	KQX45528.1	ASD33_20665	ASD33_24080	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
KQX47239.1	KQX49360.1	ASD33_20665	ASD33_16495	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
KQX47239.1	KQX52719.1	ASD33_20665	ASD33_05440	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
KQX47239.1	KQX53583.1	ASD33_20665	ASD33_10550	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
KQX47239.1	KQX53686.1	ASD33_20665	ASD33_07140	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
KQX47239.1	KQX57991.1	ASD33_20665	ASD33_26275	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
KQX47239.1	KQX58775.1	ASD33_20665	ASD33_00210	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KQX49360.1	KQX47239.1	ASD33_16495	ASD33_20665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
KQX49360.1	KQX52719.1	ASD33_16495	ASD33_05440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
KQX49360.1	KQX58775.1	ASD33_16495	ASD33_00210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
KQX50904.1	KQX52719.1	ASD33_12865	ASD33_05440	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
KQX50904.1	KQX53320.1	ASD33_12865	ASD33_09030	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KQX50924.1	KQX52719.1	ASD33_12980	ASD33_05440	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
KQX50924.1	KQX53320.1	ASD33_12980	ASD33_09030	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
KQX52719.1	KQX45528.1	ASD33_05440	ASD33_24080	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KQX52719.1	KQX47239.1	ASD33_05440	ASD33_20665	Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700