KQX52730.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX52730.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)

Predicted Functional Partners:

KQX52731.1

0.999

KQX52732.1

0.993

KQX50676.1

0.973

KQX59375.1

0.961

KQX54699.1

0.961

KQX56929.1

0.932

KQX59376.1

0.930

KQX54923.1

0.925

hemH

0.845

KQX59675.1

0.777

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX50676.1	KQX52730.1	ASD33_11460	ASD33_05500	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
KQX50676.1	KQX52731.1	ASD33_11460	ASD33_05505	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.992
KQX50676.1	KQX54699.1	ASD33_11460	ASD33_32270	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.990
KQX50676.1	KQX59375.1	ASD33_11460	ASD33_03585	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.990
KQX50676.1	KQX59675.1	ASD33_11460	ASD33_03590	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.916
KQX52730.1	KQX50676.1	ASD33_05500	ASD33_11460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
KQX52730.1	KQX52731.1	ASD33_05500	ASD33_05505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.999
KQX52730.1	KQX52732.1	ASD33_05500	ASD33_05510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KQX52730.1	KQX54699.1	ASD33_05500	ASD33_32270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.961
KQX52730.1	KQX54923.1	ASD33_05500	ASD33_31775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
KQX52730.1	KQX56929.1	ASD33_05500	ASD33_28125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
KQX52730.1	KQX59375.1	ASD33_05500	ASD33_03585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.961
KQX52730.1	KQX59376.1	ASD33_05500	ASD33_03595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
KQX52730.1	KQX59675.1	ASD33_05500	ASD33_03590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.777
KQX52730.1	hemH	ASD33_05500	ASD33_29720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	0.845
KQX52731.1	KQX50676.1	ASD33_05505	ASD33_11460	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
KQX52731.1	KQX52730.1	ASD33_05505	ASD33_05500	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX52731.1	KQX52732.1	ASD33_05505	ASD33_05510	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQX52731.1	KQX54699.1	ASD33_05505	ASD33_32270	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.728
KQX52731.1	KQX54923.1	ASD33_05505	ASD33_31775	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991