KQX53042.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX53042.1

NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)

Predicted Functional Partners:

KQX50907.1

0.791

KQX57334.1

0.791

cobT-2

0.752

KQX47678.1

0.742

KQX48120.1

0.676

KQX53158.1

0.634

KQX53423.1

0.634

KQX50739.1

0.634

KQX50772.1

0.634

KQX49419.1

0.634

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX47678.1	KQX53042.1	ASD33_18180	ASD33_07375	Bifunctional riboflavin kinase/FMN adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
KQX47678.1	cobT-2	ASD33_18180	ASD33_19645	Bifunctional riboflavin kinase/FMN adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.	5,6-dimethylbenzimidazole synthase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.749
KQX48120.1	KQX49419.1	ASD33_18805	ASD33_16865	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	KQX50739.1	ASD33_18805	ASD33_11815	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	KQX50772.1	ASD33_18805	ASD33_12030	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	KQX50907.1	ASD33_18805	ASD33_12890	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the release of sulfite from alkanesulfonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	KQX53042.1	ASD33_18805	ASD33_07375	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
KQX48120.1	KQX53158.1	ASD33_18805	ASD33_08100	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	KQX53423.1	ASD33_18805	ASD33_09635	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	KQX57334.1	ASD33_18805	ASD33_26920	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the release of sulfite from alkanesulfonates; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX48120.1	cobT-2	ASD33_18805	ASD33_19645	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,6-dimethylbenzimidazole synthase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.451
KQX49419.1	KQX48120.1	ASD33_16865	ASD33_18805	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX49419.1	KQX53042.1	ASD33_16865	ASD33_07375	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
KQX49419.1	KQX53158.1	ASD33_16865	ASD33_08100	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
KQX49419.1	cobT-2	ASD33_16865	ASD33_19645	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,6-dimethylbenzimidazole synthase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.406
KQX50739.1	KQX48120.1	ASD33_11815	ASD33_18805	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQX50739.1	KQX50772.1	ASD33_11815	ASD33_12030	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
KQX50739.1	KQX53042.1	ASD33_11815	ASD33_07375	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
KQX50739.1	cobT-2	ASD33_11815	ASD33_19645	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,6-dimethylbenzimidazole synthase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.406
KQX50772.1	KQX48120.1	ASD33_12030	ASD33_18805	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636