KQX53054.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX53054.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (91 aa)

Predicted Functional Partners:

KQX57960.1

0.850

KQX53053.1

0.807

KQX49423.1

0.776

KQX53052.1

0.714

KQX49775.1

0.698

KQX49518.1

0.698

KQX48142.1

0.698

KQX52990.1

0.697

KQX47773.1

0.697

KQX58131.1

0.692

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX47773.1	KQX53053.1	ASD33_18685	ASD33_07445	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
KQX47773.1	KQX53054.1	ASD33_18685	ASD33_07450	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.697
KQX47773.1	KQX58131.1	ASD33_18685	ASD33_26845	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KQX48142.1	KQX53053.1	ASD33_20230	ASD33_07445	CbxX/CfqX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
KQX48142.1	KQX53054.1	ASD33_20230	ASD33_07450	CbxX/CfqX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.698
KQX48142.1	KQX58131.1	ASD33_20230	ASD33_26845	CbxX/CfqX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
KQX49423.1	KQX53053.1	ASD33_16905	ASD33_07445	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
KQX49423.1	KQX53054.1	ASD33_16905	ASD33_07450	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.776
KQX49518.1	KQX53053.1	ASD33_17425	ASD33_07445	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
KQX49518.1	KQX53054.1	ASD33_17425	ASD33_07450	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.698
KQX49518.1	KQX58131.1	ASD33_17425	ASD33_26845	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
KQX49775.1	KQX53053.1	ASD33_14005	ASD33_07445	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
KQX49775.1	KQX53054.1	ASD33_14005	ASD33_07450	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.698
KQX49775.1	KQX58131.1	ASD33_14005	ASD33_26845	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
KQX52990.1	KQX53053.1	ASD33_07075	ASD33_07445	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
KQX52990.1	KQX53054.1	ASD33_07075	ASD33_07450	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.697
KQX52990.1	KQX57960.1	ASD33_07075	ASD33_26090	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
KQX52990.1	KQX58131.1	ASD33_07075	ASD33_26845	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KQX53052.1	KQX53053.1	ASD33_07440	ASD33_07445	Tellurium resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
KQX53052.1	KQX53054.1	ASD33_07440	ASD33_07450	Tellurium resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.714