STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQX50620.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
KQX50619.1
Oligosaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.807
KQX50859.1
1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
KQX50596.1
Dodecin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
KQX52106.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.522
KQX54964.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
KQX47988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
     0.459
KQX59010.1
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
KQX50622.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.431
KQX53485.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.424
Your Current Organism:
Streptomyces sp. Root1304
NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.