KQX50767.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX50767.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2062 aa)

Predicted Functional Partners:

KQX57960.1

0.999

ASD33_32475

0.999

KQX54511.1

0.999

KQX54473.1

0.999

KQX54474.1

0.999

KQX59431.1

0.998

KQX48120.1

0.997

KQX57962.1

0.994

KQX53095.1

0.993

KQX59347.1

0.988

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD33_32475	KQX48120.1	ASD33_32475	ASD33_18805	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX50767.1	ASD33_32475	ASD33_11995	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX53095.1	ASD33_32475	ASD33_07715	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ASD33_32475	KQX54473.1	ASD33_32475	ASD33_32515	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX54474.1	ASD33_32475	ASD33_32520	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX54511.1	ASD33_32475	ASD33_32505	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX57960.1	ASD33_32475	ASD33_26090	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD33_32475	KQX57962.1	ASD33_32475	ASD33_26100	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
ASD33_32475	KQX59347.1	ASD33_32475	ASD33_03415	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ASD33_32475	KQX59431.1	ASD33_32475	ASD33_03900	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX48120.1	ASD33_32475	ASD33_18805	ASD33_32475	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX48120.1	KQX50767.1	ASD33_18805	ASD33_11995	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KQX48120.1	KQX54473.1	ASD33_18805	ASD33_32515	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX48120.1	KQX54511.1	ASD33_18805	ASD33_32505	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KQX48120.1	KQX57960.1	ASD33_18805	ASD33_26090	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX48120.1	KQX57962.1	ASD33_18805	ASD33_26100	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.982
KQX48120.1	KQX59347.1	ASD33_18805	ASD33_03415	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
KQX48120.1	KQX59431.1	ASD33_18805	ASD33_03900	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
KQX50767.1	ASD33_32475	ASD33_11995	ASD33_32475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Condensation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50767.1	KQX48120.1	ASD33_11995	ASD33_18805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997