STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQX50782.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)    
Predicted Functional Partners:
KQX59492.1
1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.
   
    0.775
KQX46299.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.653
KQX50784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
KQX49937.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.521
KQX59392.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.509
KQX56960.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.509
KQX54935.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.509
KQX50783.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
KQX56383.1
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.485
gatB
glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
   
 
  0.477
Your Current Organism:
Streptomyces sp. Root1304
NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.