KQX50866.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX50866.1

Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)

Predicted Functional Partners:

KQX52668.1

0.999

KQX50867.1

0.999

KQX50043.1

0.926

KQX52955.1

0.847

KQX52656.1

0.810

KQX52954.1

0.788

KQX50868.1

0.765

KQX51071.1

0.679

KQX50869.1

0.654

KQX50870.1

0.623

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX50043.1	KQX50866.1	ASD33_15565	ASD33_12635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
KQX50043.1	KQX50867.1	ASD33_15565	ASD33_12640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
KQX50043.1	KQX52668.1	ASD33_15565	ASD33_05150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
KQX50866.1	KQX50043.1	ASD33_12635	ASD33_15565	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
KQX50866.1	KQX50867.1	ASD33_12635	ASD33_12640	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50866.1	KQX50868.1	ASD33_12635	ASD33_12645	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KQX50866.1	KQX50869.1	ASD33_12635	ASD33_12655	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
KQX50866.1	KQX50870.1	ASD33_12635	ASD33_12660	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotide sugar-1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KQX50866.1	KQX51071.1	ASD33_12635	ASD33_12650	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
KQX50866.1	KQX52656.1	ASD33_12635	ASD33_05085	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
KQX50866.1	KQX52668.1	ASD33_12635	ASD33_05150	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50866.1	KQX52954.1	ASD33_12635	ASD33_06845	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
KQX50866.1	KQX52955.1	ASD33_12635	ASD33_06850	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KQX50867.1	KQX50043.1	ASD33_12640	ASD33_15565	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
KQX50867.1	KQX50866.1	ASD33_12640	ASD33_12635	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQX50867.1	KQX50868.1	ASD33_12640	ASD33_12645	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KQX50867.1	KQX50869.1	ASD33_12640	ASD33_12655	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
KQX50867.1	KQX50870.1	ASD33_12640	ASD33_12660	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotide sugar-1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
KQX50867.1	KQX51071.1	ASD33_12640	ASD33_12650	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
KQX50867.1	KQX52954.1	ASD33_12640	ASD33_06845	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735