KQX47839.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX47839.1

Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)

Predicted Functional Partners:

KQX47840.1

0.805

KQX47841.1

0.625

KQX47842.1

0.543

mshC

0.405

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX47839.1	KQX47840.1	ASD33_19075	ASD33_19080	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KQX47839.1	KQX47841.1	ASD33_19075	ASD33_19085	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KQX47839.1	KQX47842.1	ASD33_19075	ASD33_19090	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KQX47839.1	mshC	ASD33_19075	ASD33_19095	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	0.405
KQX47840.1	KQX47839.1	ASD33_19080	ASD33_19075	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KQX47840.1	KQX47841.1	ASD33_19080	ASD33_19085	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KQX47840.1	KQX47842.1	ASD33_19080	ASD33_19090	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KQX47840.1	mshC	ASD33_19080	ASD33_19095	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	0.793
KQX47841.1	KQX47839.1	ASD33_19085	ASD33_19075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KQX47841.1	KQX47840.1	ASD33_19085	ASD33_19080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KQX47841.1	KQX47842.1	ASD33_19085	ASD33_19090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KQX47841.1	mshC	ASD33_19085	ASD33_19095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	0.870
KQX47842.1	KQX47839.1	ASD33_19090	ASD33_19075	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KQX47842.1	KQX47840.1	ASD33_19090	ASD33_19080	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KQX47842.1	KQX47841.1	ASD33_19090	ASD33_19085	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KQX47842.1	mshC	ASD33_19090	ASD33_19095	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	0.879
mshC	KQX47839.1	ASD33_19095	ASD33_19075	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
mshC	KQX47840.1	ASD33_19095	ASD33_19080	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
mshC	KQX47841.1	ASD33_19095	ASD33_19085	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
mshC	KQX47842.1	ASD33_19095	ASD33_19090	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879