KQX48098.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX48098.1

ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)

Predicted Functional Partners:

KQX48096.1

0.993

KQX48097.1

0.976

ftsY

0.967

KQX48095.1

0.947

ASD33_15520

0.946

KQX46221.1

0.941

KQX46225.1

0.941

KQX50824.1

0.940

KQX47580.1

0.940

KQX49813.1

0.939

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD33_15520	KQX48095.1	ASD33_15520	ASD33_20535	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
ASD33_15520	KQX48097.1	ASD33_15520	ASD33_20545	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ASD33_15520	KQX48098.1	ASD33_15520	ASD33_20550	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
KQX46221.1	KQX48095.1	ASD33_23100	ASD33_20535	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KQX46221.1	KQX48097.1	ASD33_23100	ASD33_20545	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KQX46221.1	KQX48098.1	ASD33_23100	ASD33_20550	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
KQX46225.1	KQX48095.1	ASD33_23120	ASD33_20535	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KQX46225.1	KQX48097.1	ASD33_23120	ASD33_20545	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KQX46225.1	KQX48098.1	ASD33_23120	ASD33_20550	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
KQX47580.1	KQX48095.1	ASD33_22295	ASD33_20535	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
KQX47580.1	KQX48097.1	ASD33_22295	ASD33_20545	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
KQX47580.1	KQX48098.1	ASD33_22295	ASD33_20550	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
KQX48095.1	ASD33_15520	ASD33_20535	ASD33_15520	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KQX48095.1	KQX46221.1	ASD33_20535	ASD33_23100	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KQX48095.1	KQX46225.1	ASD33_20535	ASD33_23120	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KQX48095.1	KQX47580.1	ASD33_20535	ASD33_22295	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
KQX48095.1	KQX48096.1	ASD33_20535	ASD33_20540	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KQX48095.1	KQX48097.1	ASD33_20535	ASD33_20545	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KQX48095.1	KQX48098.1	ASD33_20535	ASD33_20550	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KQX48095.1	KQX49813.1	ASD33_20535	ASD33_14220	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775