KQX47453.1 protein (Streptomyces sp. Root1304)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQX47453.1

TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)

Predicted Functional Partners:

KQX47452.1

0.871

KQX47454.1

0.787

KQX45675.1

0.751

KQX50895.1

0.671

KQX55829.1

0.671

KQX45698.1

0.623

KQX47447.1

0.619

KQX57822.1

0.595

KQX58786.1

0.570

KQX59579.1

0.570

Your Current Organism:

Streptomyces sp. Root1304

NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQX45675.1	KQX47453.1	ASD33_24950	ASD33_21980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
KQX45698.1	KQX47453.1	ASD33_24340	ASD33_21980	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KQX45698.1	KQX50895.1	ASD33_24340	ASD33_12800	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KQX45698.1	KQX55829.1	ASD33_24340	ASD33_31135	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KQX45698.1	KQX57822.1	ASD33_24340	ASD33_25260	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KQX45698.1	KQX58786.1	ASD33_24340	ASD33_00265	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KQX45698.1	KQX59579.1	ASD33_24340	ASD33_04775	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
KQX47447.1	KQX47452.1	ASD33_21945	ASD33_21975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
KQX47447.1	KQX47453.1	ASD33_21945	ASD33_21980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
KQX47452.1	KQX47447.1	ASD33_21975	ASD33_21945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
KQX47452.1	KQX47453.1	ASD33_21975	ASD33_21980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
KQX47452.1	KQX47454.1	ASD33_21975	ASD33_21985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
KQX47453.1	KQX45675.1	ASD33_21980	ASD33_24950	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
KQX47453.1	KQX45698.1	ASD33_21980	ASD33_24340	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KQX47453.1	KQX47447.1	ASD33_21980	ASD33_21945	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
KQX47453.1	KQX47452.1	ASD33_21980	ASD33_21975	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
KQX47453.1	KQX47454.1	ASD33_21980	ASD33_21985	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KQX47453.1	KQX50895.1	ASD33_21980	ASD33_12800	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KQX47453.1	KQX55829.1	ASD33_21980	ASD33_31135	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KQX47453.1	KQX57822.1	ASD33_21980	ASD33_25260	TesB-like acyl-CoA thioesterase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595