STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQX47491.1Agmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family. (345 aa)    
Predicted Functional Partners:
KQX57045.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.922
KQX59348.1
Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.816
KQX52824.1
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
     
 0.806
KQX48026.1
Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.789
ureAB
Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the urease beta subunit family.
       0.787
ureC-3
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
KQX47576.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.611
KQX47488.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine-cytosine permease (2.A.39) family.
       0.551
KQX49553.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.545
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.538
Your Current Organism:
Streptomyces sp. Root1304
NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.