STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQX46184.1Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
  0.540
KQX46347.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
KQX53592.1
Glucoamylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.446
KQX49849.1
Glucoamylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.446
KQX54936.1
Glucoamylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.446
KQX50135.1
Ionic transporter y4hA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.444
KQX46185.1
Aromatic compound degradation protein PaaI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
KQX53715.1
Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.412
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.401
Your Current Organism:
Streptomyces sp. Root1304
NCBI taxonomy Id: 1736450
Other names: S. sp. Root1304
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.