KQY01973.1 protein (Rhizobium sp. Root1334) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

KQY01973.1

Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)

Predicted Functional Partners:

KQY01972.1

0.998

ASD36_13240

0.937

KQY00508.1

0.908

KQY15061.1

0.883

KQY15060.1

0.876

KQY00511.1

0.874

KQY08760.1

0.866

KQY02580.1

0.860

KQY02581.1

0.859

KQY02265.1

0.858

Your Current Organism:

Rhizobium sp. Root1334

NCBI taxonomy Id: 1736456
Other names: R. sp. Root1334

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD36_13240	KQY00508.1	ASD36_13240	ASD36_20670	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ASD36_13240	KQY00511.1	ASD36_13240	ASD36_20695	Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ASD36_13240	KQY01972.1	ASD36_13240	ASD36_17790	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ASD36_13240	KQY01973.1	ASD36_13240	ASD36_17795	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
ASD36_13240	KQY02265.1	ASD36_13240	ASD36_18165	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
ASD36_13240	KQY02580.1	ASD36_13240	ASD36_15600	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
ASD36_13240	KQY02581.1	ASD36_13240	ASD36_15605	Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
ASD36_13240	KQY08760.1	ASD36_13240	ASD36_28910	Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ASD36_13240	KQY15060.1	ASD36_13240	ASD36_26100	Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
ASD36_13240	KQY15061.1	ASD36_13240	ASD36_26105	Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
KQY00508.1	ASD36_13240	ASD36_20670	ASD36_13240	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KQY00508.1	KQY00511.1	ASD36_20670	ASD36_20695	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
KQY00508.1	KQY01973.1	ASD36_20670	ASD36_17795	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KQY00508.1	KQY15060.1	ASD36_20670	ASD36_26100	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQY00511.1	ASD36_13240	ASD36_20695	ASD36_13240	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KQY00511.1	KQY00508.1	ASD36_20695	ASD36_20670	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
KQY00511.1	KQY01972.1	ASD36_20695	ASD36_17790	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KQY00511.1	KQY01973.1	ASD36_20695	ASD36_17795	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KQY00511.1	KQY02265.1	ASD36_20695	ASD36_18165	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KQY00511.1	KQY02580.1	ASD36_20695	ASD36_15600	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855