KQY99521.1 protein (Pseudolabrys sp. Root1462)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQY99521.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)

Predicted Functional Partners:

KQZ02372.1

0.998

ASD45_09470

0.998

KQZ01154.1

0.998

KQZ01745.1

0.998

ASD45_17650

0.998

KQZ02393.1

0.996

KQZ00405.1

0.996

KQZ01522.1

0.996

KQY97511.1

0.996

KQZ01801.1

0.993

Your Current Organism:

Pseudolabrys sp. Root1462

NCBI taxonomy Id: 1736466
Other names: P. sp. Root1462

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD45_09470	ASD45_17650	ASD45_09470	ASD45_17650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQY97511.1	ASD45_09470	ASD45_22180	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQY99521.1	ASD45_09470	ASD45_00940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ASD45_09470	KQZ00405.1	ASD45_09470	ASD45_05700	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQZ01154.1	ASD45_09470	ASD45_09995	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQZ01522.1	ASD45_09470	ASD45_12180	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQZ01745.1	ASD45_09470	ASD45_13440	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQZ01801.1	ASD45_09470	ASD45_13785	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQZ02372.1	ASD45_09470	ASD45_03445	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_09470	KQZ02393.1	ASD45_09470	ASD45_04885	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	ASD45_09470	ASD45_17650	ASD45_09470	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQY97511.1	ASD45_17650	ASD45_22180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQY99521.1	ASD45_17650	ASD45_00940	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ASD45_17650	KQZ00405.1	ASD45_17650	ASD45_05700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQZ01154.1	ASD45_17650	ASD45_09995	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQZ01522.1	ASD45_17650	ASD45_12180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQZ01745.1	ASD45_17650	ASD45_13440	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQZ01801.1	ASD45_17650	ASD45_13785	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ASD45_17650	KQZ02372.1	ASD45_17650	ASD45_03445	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASD45_17650	KQZ02393.1	ASD45_17650	ASD45_04885	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999