KQZ00519.1 protein (Pseudolabrys sp. Root1462)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

KQZ00519.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)

Predicted Functional Partners:

KQZ00518.1

0.974

KQZ02427.1

0.944

KQZ01496.1

0.890

KQZ02467.1

0.889

KQZ01446.1

0.885

KQY99516.1

0.879

KQZ00055.1

0.864

KQY99462.1

0.863

KQZ02545.1

0.861

KQY97469.1

0.856

Your Current Organism:

Pseudolabrys sp. Root1462

NCBI taxonomy Id: 1736466
Other names: P. sp. Root1462

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQY97469.1	KQZ00519.1	ASD45_22695	ASD45_06365	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
KQY97469.1	KQZ02427.1	ASD45_22695	ASD45_06350	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
KQY99462.1	KQZ00519.1	ASD45_00580	ASD45_06365	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
KQY99462.1	KQZ02427.1	ASD45_00580	ASD45_06350	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
KQY99516.1	KQZ00519.1	ASD45_00900	ASD45_06365	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
KQY99516.1	KQZ02427.1	ASD45_00900	ASD45_06350	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
KQZ00055.1	KQZ00519.1	ASD45_03730	ASD45_06365	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KQZ00055.1	KQZ02427.1	ASD45_03730	ASD45_06350	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
KQZ00518.1	KQZ00519.1	ASD45_06360	ASD45_06365	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
KQZ00518.1	KQZ02427.1	ASD45_06360	ASD45_06350	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KQZ00519.1	KQY97469.1	ASD45_06365	ASD45_22695	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
KQZ00519.1	KQY99462.1	ASD45_06365	ASD45_00580	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
KQZ00519.1	KQY99516.1	ASD45_06365	ASD45_00900	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
KQZ00519.1	KQZ00055.1	ASD45_06365	ASD45_03730	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KQZ00519.1	KQZ00518.1	ASD45_06365	ASD45_06360	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
KQZ00519.1	KQZ01446.1	ASD45_06365	ASD45_11735	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
KQZ00519.1	KQZ01496.1	ASD45_06365	ASD45_12025	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
KQZ00519.1	KQZ02427.1	ASD45_06365	ASD45_06350	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KQZ00519.1	KQZ02467.1	ASD45_06365	ASD45_08285	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
KQZ00519.1	KQZ02545.1	ASD45_06365	ASD45_11840	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861

page 1 of 2

Network Stats

number of nodes:

3

number of edges:

2

average node degree:

1.33

avg. local clustering coefficient:

0.667

expected number of edges:

2

PPI enrichment p-value:

0.526

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0044211

CTP salvage

2 of 3

2.6

1.31

0.0041

GO:0044206

UMP salvage

2 of 4

2.47

1.23

0.0055

GO:1901566

Organonitrogen compound biosynthetic process

9 of 611

0.94

0.93

3.83e-05

GO:0044271

Cellular nitrogen compound biosynthetic process

8 of 517

0.96

0.9

0.00015

GO:0006099

Tricarboxylic acid cycle

2 of 22

1.73

0.85

0.0207

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004849

Uridine kinase activity

2 of 3

2.6

1.04

0.0129

GO:0004834

Tryptophan synthase activity

2 of 2

2.77

1.04

0.0129

GO:0003735

Structural constituent of ribosome

3 of 58

1.49

0.76

0.0252

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

3 of 66

1.43

0.86

0.0128

GO:0005622

Intracellular anatomical structure

10 of 1962

0.48

0.36

0.0071

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:33062286

(2020) Selection markers for transformation of the sequenced reference monokaryon Okayama 7#130 and homokaryon AmutBmut of Coprinopsis cinerea.

2 of 6

2.3

1.32

0.0034

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1147

Mixed, incl. CTP salvage, and Histone deacetylase domain

3 of 6

2.47

1.82

0.00042

CL:1996

Tryptophan biosynthesis

2 of 6

2.3

0.72

0.0473

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00260

Glycine, serine and threonine metabolism

4 of 79

1.48

1.25

0.0011

map03010

Ribosome

3 of 64

1.44

0.88

0.0114

map00620

Pyruvate metabolism

3 of 89

1.3

0.75

0.0195

map00400

Phenylalanine, tyrosine and tryptophan biosynthesis

2 of 34

1.54

0.67

0.0448

map01200

Carbon metabolism

3 of 150

1.07

0.55

0.0448

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0822

Tryptophan biosynthesis

2 of 6

2.3

0.98

0.0156

KW-0689

Ribosomal protein

3 of 75

1.38

0.72

0.0273

KW-0028

Amino-acid biosynthesis

3 of 76

1.37

0.72

0.0273

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