KQY98402.1 protein (Pseudolabrys sp. Root1462)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

KQY98402.1

C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)

Predicted Functional Partners:

KQY97765.1

0.948

KQY97764.1

0.931

KQY98342.1

0.783

KQZ01950.1

0.761

KQZ02087.1

0.761

KQY97372.1

0.753

KQZ01515.1

0.724

KQZ00096.1

0.706

KQY99702.1

0.680

KQZ02088.1

0.667

Your Current Organism:

Pseudolabrys sp. Root1462

NCBI taxonomy Id: 1736466
Other names: P. sp. Root1462

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQY97372.1	KQY97765.1	ASD45_22100	ASD45_17260	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
KQY97372.1	KQY98402.1	ASD45_22100	ASD45_17250	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
KQY97372.1	KQZ00096.1	ASD45_22100	ASD45_03945	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KQY97372.1	KQZ01515.1	ASD45_22100	ASD45_12145	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
KQY97372.1	KQZ02088.1	ASD45_22100	ASD45_15410	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KQY97764.1	KQY97765.1	ASD45_17255	ASD45_17260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KQY97764.1	KQY98402.1	ASD45_17255	ASD45_17250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
KQY97764.1	KQZ00096.1	ASD45_17255	ASD45_03945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
KQY97765.1	KQY97372.1	ASD45_17260	ASD45_22100	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
KQY97765.1	KQY97764.1	ASD45_17260	ASD45_17255	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KQY97765.1	KQY98402.1	ASD45_17260	ASD45_17250	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KQY97765.1	KQY99702.1	ASD45_17260	ASD45_02015	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
KQY97765.1	KQZ00096.1	ASD45_17260	ASD45_03945	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KQY98342.1	KQY98402.1	ASD45_20650	ASD45_17250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KQY98342.1	KQZ00096.1	ASD45_20650	ASD45_03945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
KQY98342.1	KQZ02088.1	ASD45_20650	ASD45_15410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
KQY98402.1	KQY97372.1	ASD45_17250	ASD45_22100	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
KQY98402.1	KQY97764.1	ASD45_17250	ASD45_17255	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
KQY98402.1	KQY97765.1	ASD45_17250	ASD45_17260	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KQY98402.1	KQY98342.1	ASD45_17250	ASD45_20650	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

46

average node degree:

8.36

avg. local clustering coefficient:

0.982

expected number of edges:

24

PPI enrichment p-value:

4.13e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0007165

Signal transduction

9 of 320

1.36

2.09

8.47e-09

GO:0050896

Response to stimulus

10 of 790

1.01

1.21

1.16e-07

GO:0050794

Regulation of cellular process

10 of 874

0.97

1.11

2.10e-07

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016772

Transferase activity, transferring phosphorus-containing groups

9 of 586

1.1

1.3

1.00e-06

GO:0000155

Phosphorelay sensor kinase activity

3 of 85

1.46

0.67

0.0415

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005886

Plasma membrane

9 of 949

0.89

1.19e-05

GO:0016021

Integral component of membrane

9 of 1532

0.68

0.58

0.00025

GO:0016020

Membrane

10 of 2222

0.56

0.48

0.00025

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4010

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain), and PAS fold

8 of 21

2.49

7.18

1.29e-15

CL:4013

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain), and PAS fold

7 of 16

2.55

6.7

3.21e-14

CL:4015

PAC motif, and PAS fold

6 of 11

2.65

6.09

1.36e-12

CL:4018

Mixed, incl. PAS fold, and Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain

3 of 5

2.69

2.76

7.67e-06

CL:9081

Mixed, incl. PspA/IM30

2 of 5

2.51

1.4

0.0027

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0016020

Membrane

10 of 1167

0.84

0.85

4.66e-06

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0597

Phosphoprotein

8 of 179

1.56

2.77

1.07e-09

KW-0175

Coiled coil

7 of 643

0.95

0.86

0.00029

KW-0489

Methyltransferase

3 of 147

1.22

0.62

0.0382

KW-0418

Kinase

4 of 402

0.91

0.48

0.0472

KW-0808

Transferase

6 of 952

0.71

0.43

0.0312

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR013655

PAS fold-3

6 of 14

2.54

5.59

8.67e-12

IPR000700

PAS-associated, C-terminal

7 of 42

2.13

4.87

9.09e-12

IPR000014

PAS domain

8 of 60

2.04

4.8

2.44e-12

IPR035965

PAS domain superfamily

8 of 62

2.02

4.76

2.44e-12

IPR013656

PAS fold-4

6 of 36

2.13

4.2

6.33e-10

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00091

PAS domain

8 of 52

2.1

5.46

7.17e-14

SM00086

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

6 of 37

2.12

4.39

1.71e-10

SM00387

Histidine kinase-like ATPases

9 of 143

1.71

3.85

4.34e-13

SM00388

His Kinase A (phosphoacceptor) domain

8 of 123

1.72

3.61

1.58e-11

SM00448

cheY-homologous receiver domain

8 of 176

1.57

2.92

1.71e-10

(more ...)

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