STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQZ65435.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.962
bamD
Transporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.950
KQZ65434.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.933
KQZ65650.1
Cell envelope protein SmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.760
KQZ65433.1
Type II secretion system protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.662
KQZ65428.1
Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.649
KQZ60779.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.618
KQZ65432.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.614
KQZ65427.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.611
KQZ64522.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.608
Your Current Organism:
Sphingopyxis sp. Root1497
NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.