KQZ63906.1 protein (Sphingopyxis sp. Root1497)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

KQZ63906.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)

Predicted Functional Partners:

KQZ63908.1

0.934

KQZ64394.1

0.823

KQZ63907.1

0.802

KQZ63884.1

0.774

KQZ63905.1

0.773

KQZ60541.1

0.773

KQZ60692.1

0.758

alaS

0.750

KQZ62726.1

0.741

KQZ63904.1

0.701

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQZ60541.1	KQZ62726.1	ASD67_14535	ASD67_12040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KQZ60541.1	KQZ63906.1	ASD67_14535	ASD67_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQZ60692.1	KQZ63906.1	ASD67_15370	ASD67_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
KQZ60692.1	alaS	ASD67_15370	ASD67_16510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.993
KQZ62726.1	KQZ60541.1	ASD67_12040	ASD67_14535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KQZ62726.1	KQZ63884.1	ASD67_12040	ASD67_04870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KQZ62726.1	KQZ63906.1	ASD67_12040	ASD67_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
KQZ62726.1	KQZ63908.1	ASD67_12040	ASD67_05020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KQZ63884.1	KQZ62726.1	ASD67_04870	ASD67_12040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KQZ63884.1	KQZ63904.1	ASD67_04870	ASD67_05000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
KQZ63884.1	KQZ63906.1	ASD67_04870	ASD67_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KQZ63904.1	KQZ63884.1	ASD67_05000	ASD67_04870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
KQZ63904.1	KQZ63905.1	ASD67_05000	ASD67_05005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KQZ63904.1	KQZ63906.1	ASD67_05000	ASD67_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
KQZ63904.1	KQZ63907.1	ASD67_05000	ASD67_05015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KQZ63904.1	KQZ63908.1	ASD67_05000	ASD67_05020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQZ63905.1	KQZ63904.1	ASD67_05005	ASD67_05000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KQZ63905.1	KQZ63906.1	ASD67_05005	ASD67_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KQZ63905.1	KQZ63907.1	ASD67_05005	ASD67_05015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KQZ63905.1	KQZ63908.1	ASD67_05005	ASD67_05020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723