KQZ65079.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ65079.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)

Predicted Functional Partners:

KQZ63971.1

0.793

KQZ63970.1

0.755

KQZ63743.1

0.688

KQZ63972.1

0.668

KQZ65823.1

0.659

KQZ65041.1

0.610

KQZ64707.1

0.599

KQZ65426.1

0.598

KQZ65476.1

0.598

KQZ61646.1

0.562

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQZ61646.1	KQZ63743.1	ASD67_20835	ASD67_04090	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KQZ61646.1	KQZ63970.1	ASD67_20835	ASD67_05430	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
KQZ61646.1	KQZ63971.1	ASD67_20835	ASD67_05435	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
KQZ61646.1	KQZ63972.1	ASD67_20835	ASD67_05445	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
KQZ61646.1	KQZ65041.1	ASD67_20835	ASD67_03710	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
KQZ61646.1	KQZ65079.1	ASD67_20835	ASD67_05440	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
KQZ61646.1	KQZ65426.1	ASD67_20835	ASD67_03220	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
KQZ61646.1	KQZ65476.1	ASD67_20835	ASD67_03235	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KQZ63743.1	KQZ61646.1	ASD67_04090	ASD67_20835	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KQZ63743.1	KQZ63970.1	ASD67_04090	ASD67_05430	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
KQZ63743.1	KQZ63971.1	ASD67_04090	ASD67_05435	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
KQZ63743.1	KQZ63972.1	ASD67_04090	ASD67_05445	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KQZ63743.1	KQZ65041.1	ASD67_04090	ASD67_03710	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KQZ63743.1	KQZ65079.1	ASD67_04090	ASD67_05440	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
KQZ63743.1	KQZ65426.1	ASD67_04090	ASD67_03220	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
KQZ63743.1	KQZ65476.1	ASD67_04090	ASD67_03235	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KQZ63970.1	KQZ61646.1	ASD67_05430	ASD67_20835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
KQZ63970.1	KQZ63743.1	ASD67_05430	ASD67_04090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
KQZ63970.1	KQZ63971.1	ASD67_05430	ASD67_05435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
KQZ63970.1	KQZ63972.1	ASD67_05430	ASD67_05445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638