KQZ64553.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ64553.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)

Predicted Functional Partners:

ASD67_08815

0.634

KQZ64554.1

0.603

KQZ64555.1

0.483

KQZ64556.1

0.420

KQZ64557.1

0.420

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD67_08815	KQZ64553.1	ASD67_08815	ASD67_08820	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
ASD67_08815	KQZ64554.1	ASD67_08815	ASD67_08825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
ASD67_08815	KQZ64555.1	ASD67_08815	ASD67_08830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
KQZ64553.1	ASD67_08815	ASD67_08820	ASD67_08815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.634
KQZ64553.1	KQZ64554.1	ASD67_08820	ASD67_08825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
KQZ64553.1	KQZ64555.1	ASD67_08820	ASD67_08830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
KQZ64553.1	KQZ64556.1	ASD67_08820	ASD67_08835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.420
KQZ64553.1	KQZ64557.1	ASD67_08820	ASD67_08840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.420
KQZ64554.1	ASD67_08815	ASD67_08825	ASD67_08815	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.443
KQZ64554.1	KQZ64553.1	ASD67_08825	ASD67_08820	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
KQZ64554.1	KQZ64555.1	ASD67_08825	ASD67_08830	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.697
KQZ64554.1	KQZ64556.1	ASD67_08825	ASD67_08835	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.595
KQZ64554.1	KQZ64557.1	ASD67_08825	ASD67_08840	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.595
KQZ64555.1	ASD67_08815	ASD67_08830	ASD67_08815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
KQZ64555.1	KQZ64553.1	ASD67_08830	ASD67_08820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KQZ64555.1	KQZ64554.1	ASD67_08830	ASD67_08825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
KQZ64555.1	KQZ64556.1	ASD67_08830	ASD67_08835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.658
KQZ64555.1	KQZ64557.1	ASD67_08830	ASD67_08840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.658
KQZ64556.1	KQZ64553.1	ASD67_08835	ASD67_08820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
KQZ64556.1	KQZ64554.1	ASD67_08835	ASD67_08825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595