KQZ64726.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ64726.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)

Predicted Functional Partners:

KQZ64727.1

0.845

KQZ64335.1

0.740

KQZ63941.1

0.731

KQZ60855.1

0.698

KQZ60623.1

0.691

KQZ64728.1

0.689

KQZ65086.1

0.670

KQZ64336.1

0.633

KQZ64197.1

0.619

KQZ65650.1

0.618

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQZ60623.1	KQZ60855.1	ASD67_14980	ASD67_16270	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
KQZ60623.1	KQZ63941.1	ASD67_14980	ASD67_05215	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
KQZ60623.1	KQZ64197.1	ASD67_14980	ASD67_06760	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.587
KQZ60623.1	KQZ64335.1	ASD67_14980	ASD67_07535	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Double-strand break repair protein AddB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KQZ60623.1	KQZ64336.1	ASD67_14980	ASD67_07540	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	0.482
KQZ60623.1	KQZ64726.1	ASD67_14980	ASD67_09785	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KQZ60623.1	KQZ65086.1	ASD67_14980	ASD67_05940	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
KQZ60623.1	KQZ65650.1	ASD67_14980	ASD67_00640	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope protein SmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KQZ60855.1	KQZ60623.1	ASD67_16270	ASD67_14980	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
KQZ60855.1	KQZ63941.1	ASD67_16270	ASD67_05215	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
KQZ60855.1	KQZ64197.1	ASD67_16270	ASD67_06760	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.563
KQZ60855.1	KQZ64335.1	ASD67_16270	ASD67_07535	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Double-strand break repair protein AddB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
KQZ60855.1	KQZ64336.1	ASD67_16270	ASD67_07540	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	0.679
KQZ60855.1	KQZ64726.1	ASD67_16270	ASD67_09785	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
KQZ60855.1	KQZ64727.1	ASD67_16270	ASD67_09790	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KQZ60855.1	KQZ65086.1	ASD67_16270	ASD67_05940	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KQZ60855.1	KQZ65650.1	ASD67_16270	ASD67_00640	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope protein SmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
KQZ63941.1	KQZ60623.1	ASD67_05215	ASD67_14980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
KQZ63941.1	KQZ60855.1	ASD67_05215	ASD67_16270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
KQZ63941.1	KQZ64197.1	ASD67_05215	ASD67_06760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.585