KQZ64735.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ64735.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)

Predicted Functional Partners:

KQZ64736.1

0.848

KQZ64584.1

0.543

KQZ61060.1

0.500

KQZ62229.1

0.498

KQZ65108.1

0.465

ASD67_20365

0.462

KQZ65132.1

0.460

KQZ66012.1

0.451

KQZ64737.1

0.448

KQZ66000.1

0.441

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD67_20365	KQZ62229.1	ASD67_20365	ASD67_11740	HTH asnC-type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
ASD67_20365	KQZ64584.1	ASD67_20365	ASD67_08985	HTH asnC-type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ASD67_20365	KQZ64735.1	ASD67_20365	ASD67_09835	HTH asnC-type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
ASD67_20365	KQZ65132.1	ASD67_20365	ASD67_07725	HTH asnC-type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KQZ61060.1	KQZ62229.1	ASD67_17430	ASD67_11740	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ61060.1	KQZ64584.1	ASD67_17430	ASD67_08985	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KQZ61060.1	KQZ64735.1	ASD67_17430	ASD67_09835	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
KQZ61060.1	KQZ65132.1	ASD67_17430	ASD67_07725	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KQZ62229.1	ASD67_20365	ASD67_11740	ASD67_20365	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	HTH asnC-type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ62229.1	KQZ61060.1	ASD67_11740	ASD67_17430	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ62229.1	KQZ64584.1	ASD67_11740	ASD67_08985	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
KQZ62229.1	KQZ64735.1	ASD67_11740	ASD67_09835	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ62229.1	KQZ64736.1	ASD67_11740	ASD67_09840	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ62229.1	KQZ65108.1	ASD67_11740	ASD67_06670	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ62229.1	KQZ65132.1	ASD67_11740	ASD67_07725	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KQZ62229.1	KQZ66000.1	ASD67_11740	ASD67_02640	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ62229.1	KQZ66012.1	ASD67_11740	ASD67_00415	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KQZ64584.1	ASD67_20365	ASD67_08985	ASD67_20365	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HTH asnC-type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KQZ64584.1	KQZ61060.1	ASD67_08985	ASD67_17430	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KQZ64584.1	KQZ62229.1	ASD67_08985	ASD67_11740	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410