KQZ64759.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ64759.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)

Predicted Functional Partners:

KQZ64760.1

0.947

KQZ64708.1

0.752

KQZ63697.1

0.746

KQZ64707.1

0.741

KQZ64758.1

0.684

KQZ63690.1

0.568

KQZ60824.1

0.546

KQZ64242.1

0.528

KQZ60823.1

0.511

KQZ64702.1

0.466

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQZ60823.1	KQZ60824.1	ASD67_16095	ASD67_16100	Flagellar hook-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.997
KQZ60823.1	KQZ64759.1	ASD67_16095	ASD67_09975	Flagellar hook-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KQZ60824.1	KQZ60823.1	ASD67_16100	ASD67_16095	Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.997
KQZ60824.1	KQZ64759.1	ASD67_16100	ASD67_09975	Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
KQZ63690.1	KQZ64707.1	ASD67_03810	ASD67_09675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KQZ63690.1	KQZ64759.1	ASD67_03810	ASD67_09975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
KQZ63697.1	KQZ64242.1	ASD67_03845	ASD67_07010	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
KQZ63697.1	KQZ64702.1	ASD67_03845	ASD67_09645	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
KQZ63697.1	KQZ64707.1	ASD67_03845	ASD67_09675	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
KQZ63697.1	KQZ64708.1	ASD67_03845	ASD67_09680	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KQZ63697.1	KQZ64759.1	ASD67_03845	ASD67_09975	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
KQZ63697.1	KQZ64760.1	ASD67_03845	ASD67_09980	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
KQZ64242.1	KQZ63697.1	ASD67_07010	ASD67_03845	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
KQZ64242.1	KQZ64702.1	ASD67_07010	ASD67_09645	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
KQZ64242.1	KQZ64707.1	ASD67_07010	ASD67_09675	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
KQZ64242.1	KQZ64708.1	ASD67_07010	ASD67_09680	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
KQZ64242.1	KQZ64759.1	ASD67_07010	ASD67_09975	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
KQZ64242.1	KQZ64760.1	ASD67_07010	ASD67_09980	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KQZ64702.1	KQZ63697.1	ASD67_09645	ASD67_03845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
KQZ64702.1	KQZ64242.1	ASD67_09645	ASD67_07010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732