KQZ65221.1 protein (Sphingopyxis sp. Root1497)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

KQZ65221.1

TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (995 aa)

Predicted Functional Partners:

KQZ65404.1

0.661

KQZ64604.1

0.636

KQZ65405.1

0.625

KQZ65406.1

0.597

KQZ64186.1

0.594

KQZ65710.1

0.576

KQZ64185.1

0.576

KQZ65109.1

0.570

KQZ65823.1

0.562

KQZ64187.1

0.561

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQZ64185.1	KQZ64186.1	ASD67_06695	ASD67_06700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KQZ64185.1	KQZ64187.1	ASD67_06695	ASD67_06710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KQZ64185.1	KQZ64604.1	ASD67_06695	ASD67_09110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
KQZ64185.1	KQZ65109.1	ASD67_06695	ASD67_06705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KQZ64185.1	KQZ65221.1	ASD67_06695	ASD67_11215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
KQZ64185.1	KQZ65404.1	ASD67_06695	ASD67_03105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
KQZ64185.1	KQZ65405.1	ASD67_06695	ASD67_03110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQZ64185.1	KQZ65406.1	ASD67_06695	ASD67_03115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQZ64185.1	KQZ65710.1	ASD67_06695	ASD67_00985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
KQZ64185.1	KQZ65823.1	ASD67_06695	ASD67_01640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
KQZ64186.1	KQZ64185.1	ASD67_06700	ASD67_06695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KQZ64186.1	KQZ64187.1	ASD67_06700	ASD67_06710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KQZ64186.1	KQZ65109.1	ASD67_06700	ASD67_06705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KQZ64186.1	KQZ65221.1	ASD67_06700	ASD67_11215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KQZ64186.1	KQZ65404.1	ASD67_06700	ASD67_03105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQZ64186.1	KQZ65405.1	ASD67_06700	ASD67_03110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQZ64186.1	KQZ65406.1	ASD67_06700	ASD67_03115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQZ64186.1	KQZ65710.1	ASD67_06700	ASD67_00985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
KQZ64186.1	KQZ65823.1	ASD67_06700	ASD67_01640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KQZ64187.1	KQZ64185.1	ASD67_06710	ASD67_06695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922