STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQZ64967.1LD-carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
KQZ64966.1
UDP-N-acetylmuramate--alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.913
KQZ62229.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.655
KQZ64968.1
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
   0.511
KQZ62770.1
Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.506
KQZ64809.1
Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
KQZ61648.1
Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
KQZ64969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.460
KQZ64781.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
KQZ61977.1
Cyanophycin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MurCDEF family.
      
 0.410
Your Current Organism:
Sphingopyxis sp. Root1497
NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.